Difference between revisions of "Projects/READY-GO: Prediction of protein functional from peptide sequences"
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Revision as of 18:05, 24 September 2020
Problem 75
- Title: Projects/READY-GO: Prediction of protein functional from peptide sequences
- Problem:
- Data:
- from DeepLoc on this page It’s a multi-FASTA file, where each entry (« ^> ») corresponds to a protein
- DeepLoc-1.0: Eukaryotic protein subcellular localization predictor
- UniProtKB - Q9H400 (LIME1_HUMAN)
- GO-CAM
- Saccharomyces Genome Database (SGD)
- References:
- https://elifesciences.org/articles/39397
- Transcripts’ evolutionary history and structural dynamics give mechanistic insights into the functional diversity of the JNK family by Elodie Laine et al, 2020, biorxiv, github
- Draft problem statement
- Basic solution: in the lab paper
- Method: to be established
- Authors: Elodie Laine, Sergei Grudinin, and Vadim Strijov