Difference between revisions of "Projects/READY-GO: Prediction of protein functional from peptide sequences"
From Research management course
(Created page with "==Problem 75== * Title: Projects/GOFUN: Prediction of protein functional from peptide sequences * Problem: * Data: *# from DeepLoc on this [http://www.cbs.dtu.dk/services/Dee...") |
|||
| Line 1: | Line 1: | ||
==Problem 75== | ==Problem 75== | ||
| − | * Title: Projects/ | + | * Title: Projects/READY-GO: Prediction of protein functional from peptide sequences |
* Problem: | * Problem: | ||
* Data: | * Data: | ||
Revision as of 18:05, 24 September 2020
Problem 75
- Title: Projects/READY-GO: Prediction of protein functional from peptide sequences
- Problem:
- Data:
- from DeepLoc on this page It’s a multi-FASTA file, where each entry (« ^> ») corresponds to a protein
- DeepLoc-1.0: Eukaryotic protein subcellular localization predictor
- UniProtKB - Q9H400 (LIME1_HUMAN)
- GO-CAM
- Saccharomyces Genome Database (SGD)
- References:
- https://elifesciences.org/articles/39397
- Transcripts’ evolutionary history and structural dynamics give mechanistic insights into the functional diversity of the JNK family by Elodie Laine et al, 2020, biorxiv, github
- Draft problem statement
- Basic solution: in the lab paper
- Method: to be established
- Authors: Elodie Laine, Sergei Grudinin, and Vadim Strijov