Projects/READY-GO: Prediction of protein functional from peptide sequences

Problem 75

• Title: Projects/GOFUN: Prediction of protein functional from peptide sequences
• Problem:
• Data:
  1. from DeepLoc on this page It’s a multi-FASTA file, where each entry (« ^> ») corresponds to a protein
  2. DeepLoc-1.0: Eukaryotic protein subcellular localization predictor
  3. UniProtKB - Q9H400 (LIME1_HUMAN)
  4. GO-CAM
  5. Saccharomyces Genome Database (SGD)
• References:
  1. https://elifesciences.org/articles/39397
  2. Transcripts’ evolutionary history and structural dynamics give mechanistic insights into the functional diversity of the JNK family by Elodie Laine et al, 2020, biorxiv, github
  3. Draft problem statement
• Basic solution: in the lab paper
• Method: to be established
• Authors: Elodie Laine, Sergei Grudinin, and Vadim Strijov